bam_stringtie_merge

Assemble transcripts from sorted BAM alignments using StringTie, then merge per-sample transcript GTFs into a unified annotation.

rna-seqtranscript-assemblytranscript-mergestringtiegtf

Description

Assemble transcripts from sorted BAM alignments using StringTie, then merge per-sample transcript GTFs into a unified annotation.

name

description

pattern

Sorted alignment files.
Structure: [ val(meta), path(bam) ]

*.bam

Reference gene annotation (GTF) for guided assembly and merge.
Structure: [ val(meta), path(gtf) ]

*.gtf

name

description

pattern

Merged transcript annotation produced by StringTie —merge.
Structure: [ val(meta), path(gtf) ]

*.gtf

File containing software versions for the subworkflow components.
Structure: [ path(versions.yml) ]

versions.yml