Calculate read duplication rate
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
the alignment in bam format
*.{bam}
seq_xls
Read duplication rate determined from mapping position of read
*seq.DupRate.xls
pos_xls
*pos.DupRate.xls
Read duplication rate determined from sequence of read
pdf
*.pdf
plot of duplication rate
rscript
*.r
script to reproduce the plot
*.R
versions
versions.yml
File containing software versions
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
