Perform HLA-I typing of sequencing data
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM file
*.{bam}
bai
BAM index file
*.{bai}
hla_type
Groovy Map containing sample information e.g. [ id:‘test’, seq_type:‘DNA’ ]
${prefix}/*.tsv
HLA type
coverage_plot
${prefix}/*.pdf
OptiType coverage plot
versions
versions.yml
File containing software versions
Precision HLA typing from next-generation sequencing data
