phylogenetic placement of query sequences in a reference tree
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
queryaln
:file
aligned query sequences in any supported format including phylip and fasta, may be gzipped
*
referencealn
reference alignment in any supported format including phylip and fasta, may be gzipped
referencetree
newick file containing the reference tree in which query sequences will be placed
bfastfile
file argument to the —bfast parameter
binaryfile
file argument to the —binary parameter
epang
./.
:directory
directory in which EPA-NG was run
jplace
*.epa_result.jplace.gz
gzipped file with placement information
*.jplace.gz
log
*.epa_info.log
log file from placement
*.log
versions
versions.yml
File containing software versions
Massively parallel phylogenetic placement of genetic sequences
