modules/doubletdetection

Doublet detection in single-cell RNA-seq data

single-celldoubletsdoublet_detection

https://github.com/nf-core/modules/[...]/modules/nf-core/doubletdetection

Description

Doublet detection in single-cell RNA-seq data

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`h5ad`
`:file`

H5AD anndata object

*.h5ad

Output

name:type

description

pattern

`h5ad`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*.h5ad`
`:file`

H5AD anndata object

*.h5ad

`predictions`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

`*.pkl`
`:file`

pandas dataframe containing the doublet classification

*.pkl

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

doubletdetection
MIT

Doublet detection in single-cell RNA-seq data

https://github.com/JonathanShor/DoubletDetection 10.5281/zenodo.6349517

modules/doubletdetection

Description

Input

`meta`
`:map`

`h5ad`
`:file`

Output

`h5ad`

`meta`
`:map`

`*.h5ad`
`:file`

`predictions`

`meta`
`:map`

`*.pkl`
`:file`

`versions`

`versions.yml`
`:file`

Tools

doubletdetection
MIT

included in

maintainer

get in touch

modules/doubletdetection

Description

Input

meta:map

h5ad:file

Output

h5ad

meta:map

*.h5ad:file

predictions

meta:map

*.pkl:file

versions

versions.yml:file

Tools

doubletdetection MIT

included in

maintainer

get in touch

`meta`
`:map`

`h5ad`
`:file`

`h5ad`

`meta`
`:map`

`*.h5ad`
`:file`

`predictions`

`meta`
`:map`

`*.pkl`
`:file`

`versions`

`versions.yml`
`:file`

doubletdetection
MIT