modules/custom_sratoolsncbisettings

Test for the presence of suitable NCBI settings or create them on the fly.

NCBIsettingssra-toolsprefetchfasterq-dump

https://github.com/nf-core/modules/[...]/modules/nf-core/custom/sratoolsncbisettings

Description

Test for the presence of suitable NCBI settings or create them on the fly.

Input

name:type

description

pattern

`ids`
`:string`

List of id settings

Output

name:type

description

pattern

`ncbi_settings`

`*.mkfg`
`:file`

An NCBI user settings file.

*.mkfg

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

sratools
Public Domain

SRA Toolkit and SDK from NCBI

github.com/ncbi/sra-tools github.com/ncbi/sra-tools/wiki https://github.com/ncbi/sra-tools