Description

Generate fragment-delimited genomic bins

Input

name:type
description
pattern

fasta

:file

Genome assembly FASTA file or folder containing FASTA files (uncompressed).

*.{fasta,fa}

chromsizes

:file

Path to a chromsizes file.

enzyme

:string

Name of restriction enzyme. e.g. CviQI.

Output

name:type
description
pattern

bed

*.bed

:file

A genome segmentation of restriction fragments as a BED file.

*.{bed}

versions

versions.yml

:file

File containing software versions

versions.yml