Create a cooler from genomic pairs and bins
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
contacts
:file
Path to contacts (e.g. read pairs, pairix, tabix) file.
index
Path to index file of the contacts.
meta2
chromsizes
Path to a chromsizes file.
mode
:integer
Input mode for cooler cload - one of pairs, pairix, tabix
cool_bin
Bins size in bp
cool
*.cool
Output COOL file path
versions
versions.yml
File containing software versions
Sparse binary format for genomic interaction matrices
