Description

Cut up fasta file in non-overlapping or overlapping parts of equal length.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta

:file

(Uncompressed) FASTA file containing contigs

*.{fasta,fna,fa,fas}

bed

:boolean

Specify whether to generate a BED file describing where each contig was cut up

Output

name:type
description
pattern

fasta

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fasta

:file

Cut up fasta file in non-overlapping or overlapping parts of equal length.

*.fasta

bed

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bed

:file

Optional BED File containing locations on original contigs where they were cut up.

*.bed

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

concoct
FreeBSD

Clustering cONtigs with COverage and ComposiTion