A simple program to parse Illumina NGS data and check it for quality criteria
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
run_dir
:file
Illumina sequencing run directory Can be directory or a compressed tar (tar.gz) of the directory
checkqc_config
CheckQC configuration file
*.{yml,yaml}
report
CheckQC report in json format
*checkqc_report.json
versions
versions.yml
File containing software versions
A simple program to parse Illumina NGS data and check it for quality criteria.
