Hierarchical Hi-C compartment computation
meta
:map
Groovy Map containing sample information. E.g. [ id:‘test’, single_end:false ]
cool
:file
Path to COOL file
*.{cool.mcool}
resolution
:integer
In case a .mcool file is provided, which resolution level to use for the analysis
output_folder
${prefix}/
:directory
Output folder containing sub-compartment (.tsv/.bed) and domain boundaries calls (.bed)
intermediate_data_folder
${prefix}/intermediate_data/
Output folder containing intermediate data produced during the computation
versions
versions.yml
File containing software versions
