Sorts a feature file by chromosome and other criteria.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
intervals
:file
BED/BEDGRAPH
*.{bed|bedGraph}
genome_file
Optional reference genome 2 column file that defines the expected chromosome order.
*.{fai,txt,chromsizes}
sorted
*.${extension}
Sorted output file
versions
versions.yml
File containing software versions
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
