extract sequences in a FASTA file based on intervals defined in a feature file.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed
:file
Bed feature file
*.{bed}
fasta
Input fasta file
*.{fa,fasta}
*.fa
Output fasta file with extracted sequences
*.{fa}
versions
versions.yml
File containing software versions
A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
