Description

Concatenate VCF files

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

vcfs

:list

List containing 2 or more vcf files e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]

tbi

:list

List containing 2 or more index files (optional) e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]

Output

name:type
description
pattern

vcf

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.${extension}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.{vcf,vcf.gz,bcf,bcf.gz}

tbi

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.${extension}.tbi

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tbi

csi

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

${prefix}.${extension}.csi

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.csi

versions

versions.yml

:file

File containing software versions

versions.yml