Description

BBNorm is designed to normalize coverage by down-sampling reads over high-depth areas of a genome, to result in a flat coverage distribution.

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fastq

:file

fastq file

*.{fastq,fq}(.gz)?

Output

name:type
description
pattern

fastq

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fastq.gz

:file

fastq file

*.{fastq, fq}.gz

log

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.log

:file

log file

*.log

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

bbmap
BBMap - Bushnell B. - sourceforge.net/projects/bbmap/

BBMap is a short read aligner, as well as various other bioinformatic tools.

jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbnorm-guide/
included in
magmetatdenovo
maintainer
Github user danilodileo
get in touch
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