modules/bandage_image

Render an assembly graph in GFA 1.0 format to PNG and SVG image formats

gfagraphassemblyvisualisation

https://github.com/nf-core/modules/[...]/modules/nf-core/bandage/image

Description

Render an assembly graph in GFA 1.0 format to PNG and SVG image formats

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`gfa`
`:file`

Assembly graph in GFA 1.0 format

*.gfa

Output

name:type

description

pattern

`png`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.png`
`:file`

Bandage image in PNG format

*.png

`svg`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.svg`
`:file`

Bandage image in SVG format

*.svg

`versions`

`versions.yml`
`:file`

File containing software versions

versions.yml

Tools

bandage
GPL-3.0-or-later

Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

github.com/rrwick/Bandage

modules/bandage_image

Description

Input

`meta`
`:map`

`gfa`
`:file`

Output

`png`

`meta`
`:map`

`*.png`
`:file`

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions`

`versions.yml`
`:file`

Tools

bandage
GPL-3.0-or-later

included in

maintainer

get in touch

modules/bandage_image

Description

Input

meta:map

gfa:file

Output

png

meta:map

*.png:file

svg

meta:map

*.svg:file

versions

versions.yml:file

Tools

bandage GPL-3.0-or-later

included in

maintainer

get in touch

`meta`
`:map`

`gfa`
`:file`

`png`

`meta`
`:map`

`*.png`
`:file`

`svg`

`meta`
`:map`

`*.svg`
`:file`

`versions`

`versions.yml`
`:file`

bandage
GPL-3.0-or-later