Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM/CRAM/SAM file
*.{bam,cram,sam}
meta2
Groovy Map containing reference information e.g. [ id:‘test’ ]
fasta
Assembly FASTA file
*.{fasta}
meta3
gtf
Annotation GTF file
*.{gtf}
blacklist
Blacklist file
*.{tsv}
known_fusions
Known fusions file
cytobands
Cytobands file
protein_domains
Protein domains file
*.{gff3}
fusions
*.fusions.tsv
File contains fusions which pass all of Arriba’s filters.
*.{fusions.tsv}
fusions_fail
*.fusions.discarded.tsv
File contains fusions that Arriba classified as an artifact or that are also observed in healthy tissue.
*.{fusions.discarded.tsv}
versions
versions.yml
File containing software versions
Fast and accurate gene fusion detection from RNA-Seq data
